Design of novel alpha7-subtype-preferring nicotinic acetylcholine receptor agonists: application of docking and MM-PBSA computational approaches, synthetic and pharmacological studies

Bioorg Med Chem Lett. 2009 Nov 15;19(22):6353-7. doi: 10.1016/j.bmcl.2009.09.073. Epub 2009 Sep 24.

Abstract

In the search for nicotinic acetylcholine receptor (nAChRs) agonists with a selective affinity for the homomeric alpha7 channels, we carried out the virtual screening of a test set of potential nicotinic ligands, and adopted a simplified MM-PBSA approach to estimate their relative binding free energy values. By means of this procedure, previously validated by a training set of compounds, we reached a realistic compromise between computational accuracy and calculation rate, and singled out a small group of novel structurally related derivatives characterized by a promising theoretical affinity for the alpha7 subtype. Among them, five new compounds were synthesized and assayed in binding experiments at neuronal alpha7 as well as alpha4beta2 nAChRs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adipates / metabolism*
  • Binding Sites*
  • Binding, Competitive
  • Computational Biology
  • Computer Simulation
  • Ligands
  • Models, Chemical
  • Models, Molecular
  • Molecular Sequence Data
  • Nicotinic Agonists / chemistry*
  • Nicotinic Agonists / pharmacokinetics
  • Protein Binding*
  • Receptors, Nicotinic / metabolism*
  • Structure-Activity Relationship
  • Succinates / metabolism*

Substances

  • Adipates
  • Ligands
  • Nicotinic Agonists
  • Receptors, Nicotinic
  • Succinates
  • nicotinic receptor alpha4beta2
  • poly(tetramethylene succinate-co-tetramethylene adipate)